Automated Model Benchmarking R Package

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Documentation for package ‘amber’ version 1.0.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

amber-package	Overview of AMBER functions
correlationMatrix	Correlation matrix for statistical metrics computed by AMBER
correlationMatrixDiff	Plot a matrix that shows the difference between two correlation coefficient matrices computed by correlationMatrix.
correlationMatrixFluxnet	Correlation matrix for statistical metrics computed by AMBER for FLUXNET data
globalSumsTable	Table of globally summed values and corresponding biases.
metrics.compare	Compares global mean statistical meterics for multiple model runs
plotBars	Barplots of reference and model data with same unit
plotEnsembleHovmoeller	Hovmoeller Diagram for model ensemble
plotEnsembleMean	Ensemble mean plots of AMBER results (bias, bias scores, etc)
plotFluxnetStats	Plots that show statistical metrics for FLUXNET sites
plotGrid	Plots raster layers of a raster stack object
plotHovmoeller	Plot Hovmoeller diagrams that show monthly climatological mean values and biases
plotNc	Plots the time-mean of a variable stored in NetCDF model output on a regular grid
plotNcIrreg	Plots the time-mean of a variable stored in NetCDF model output on an irregular grid
plotZonalMeans	Plot zonal mean values of model and reference data in a single figure
plotZonalMeanStats	Plot zonal mean plots of AMBER results (bias, bias scores, etc)
scores.compare	Compares scores from two model runs
scores.compare.benchmarks	Compares model scores against scores reference scores.
scores.compare.ensemble	Summarize scores from multiple model runs in single figure.
scores.fluxnet.csv	Scores for FLUXNET reference data in CSV format
scores.fluxnet.nc	Scores for FLUXNET reference data in NetCDF format
scores.fluxnet.site	Scores for FLUXNET reference data when model run at FLUXNET site
scores.functional.response	Response of a variable to its forcing
scores.grid.notime	Scores for gridded reference data that do not have a varying time dimension
scores.grid.time	Scores for gridded reference data with a varying time dimension
scores.runoff	Scores for runoff
scores.site.notime	Scores for site-level reference data that do not vary in time
scores.tables	Summarize results in a table and a plot
scores.tables.tweak	Tweak summary table
seasonalCycle	Zonal mean plots of model and reference data
seasonalCycleIrreg	Zonal mean plots of model and reference data on an irregular grid
zonalMean	Zonal mean plots of model and reference data
zonalMeanIrreg	Zonal mean plots of model and reference data on an irregular grid
zonalMeanStats	Zonal mean plots of AMBER results (bias, bias scores, etc)