Simple, Fast and Efficient Querying of the 'Ensembl' API

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Documentation for package ‘ensemblQueryR’ version 0.1.0

• DESCRIPTION file.

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ensemblQueryGetPops	Function to get list of populations that Ensembl has available to query LD.
ensemblQueryLDwithSNPpair	Function to query Ensembl LD data with a pair of rsIDs. This function will return r-squared and D' values for the rsID pair.
ensemblQueryLDwithSNPpairDataframe	'ensemblQueryLDwithSNPpairDataframe' applies 'ensemblQueryLDwithSNPpair' to a data.frame of rsID pairs
ensemblQueryLDwithSNPregion	Function to query Ensembl LD data within a genomic window to get all variant pairs in the specified region and associated LD metrics.
ensemblQueryLDwithSNPregionDataframe	'ensemblQueryLDwithSNPregionDataframe' applies 'ensemblQueryLDwithSNPregion' to a data.frame of genomic coordinates and returns all variant pairs present in each specified genomic region and their associated LD metrics.
ensemblQueryLDwithSNPwindow	Function to query Ensembl LD data with a single rsID
ensemblQueryLDwithSNPwindowDataframe	'ensemblQueryLDwithSNPwindowDataframe' applies 'ensemblQueryLDwithSNPwindow' to a data.frame of rsIDs.
pingEnsembl	Function to check whether the Ensembl server is up by pinging it.