Bai_CiHep_DN.cerno	Bai_data
Bai_CiHep_dorothea_DN.Gsea	Bai_data
Bai_CiHep_dorothea_UP.Gsea	Bai_data
Bai_CiHep_v_Fib2.de	Bai_data
Bai_CiKrt_DN.cerno	Bai_data
Bai_CiKrt_v_Fib2.de	Bai_data
Bai_data	Bai_data
Bai_empty_expr_mat	Bai_data
Bai_gsc.tmod	Bai_data
buildGeneSetNetworkGeneric	buildGeneSetNetworkGeneric
buildGeneSetNetworkJaccard	buildGeneSetNetworkJaccard
buildGeneSetNetworkLF	buildGeneSetNetworkLF
buildGeneSetNetworkLFFast	buildGeneSetNetworkLF
buildGeneSetNetworkOC	buildGeneSetNetworkOC
buildGeneSetNetworkSTLF	buildGeneSetNetworkSTLF
color2IntV	color2IntV
combineRGBMatrices	combineRGBMatrices
complement	complement
contrasting_color	contrasting_color
distMat2Rank	distMat2Rank
distMat2UnitNormRank	distMat2UnitNormRank
extract_david_GSC	extract_david_GSC
gsc2tmod	gsc2tmod
gsIntersect	gsIntersect
gsIntersectCounts	gsIntersectCounts
gsnAddPathwayData	gsnAddPathwaysData
gsnAddPathwaysData	gsnAddPathwaysData
gsnAssignSubnets	gsnAssignSubnets
GSNData	GSNData
gsnDendroSubnetColors	gsnDendroSubnetColors
gsnDendroSubnetColors_dark	gsnDendroSubnetColors
gsnDistanceHistogram	gsnDistanceHistogram
gsnFilterGeneSetCollectionList	gsnFilterGeneSetCollectionList
gsnHierarchicalDendrogram	gsnHierarchicalDendrogram
gsnImportCERNO	gsnImportCERNO
gsnImportDAVID	gsnImportDAVID
gsnImportGenericPathways	gsnImportGenericPathways
gsnImportGSEA	gsnImportGSEA
gsnImportGSNORA	gsnImportGSNORA
gsnMergePathways	gsnMergePathways
gsnORAtest	gsnORAtest
gsnORAtest_cpp	gsnORAtest_cpp
gsnParedVsRawDistancePlot	gsnParedVsRawDistancePlot
gsnPareNetGenericHierarchic	gsnPareNetGenericHierarchic
gsnPareNetGenericToNearestNNeighbors	gsnPareNetGenericToNearestNNeighbors
gsnPlotNetwork	gsnPlotNetwork
gsnSubnetSummary	gsnSubnetSummary
gsnSubset	gsnSubset
gsnToIgraph	gsnToIgraph
gsn_default_distance	getAndSetFunctions
gsn_default_distance<-	getAndSetFunctions
gsn_distances	getAndSetFunctions
intV2Color	intV2Color
lfisher_cpp	lfisher_cpp
lse	lse
makeFilteredGenePresenceAbsenceMatrix	makeFilteredGenePresenceAbsenceMatrix
makeLinearNColorGradientFunction	makeLinearNColorGradientFunction
makeOneColorEncodeFunction	makeOneColorEncodeFunction
makeSymmetricDist	makeSymmetricDist
makeTwoColorEncodeFunction	makeTwoColorEncodeFunction
negative	negative
negDistMat2UnitNormRank	distMat2UnitNormRank
nzLog10	nzLog10
nzLog10.old	nzLog10.old
pick_MappedGeneSymbol	pick_MappedGeneSymbol
plot.GSNData	plot.GSNData
print.GSNData	print.GSNData
pw_id_col	getAndSetFunctions
pw_id_col<-	getAndSetFunctions
pw_n_col	getAndSetFunctions
pw_n_col<-	getAndSetFunctions
pw_sig_order	getAndSetFunctions
pw_sig_order<-	getAndSetFunctions
pw_sig_order_2	getAndSetFunctions
pw_sig_order_2<-	getAndSetFunctions
pw_stat_col	getAndSetFunctions
pw_stat_col<-	getAndSetFunctions
pw_stat_col_2	getAndSetFunctions
pw_stat_col_2<-	getAndSetFunctions
pw_type	getAndSetFunctions
pw_type<-	getAndSetFunctions
read_david_data_file	read_david_data_file
read_gmt	read_gmt
scoreJaccardMatrix_C	scoreJaccardMatrix_C
scoreLFMatrix_C	scoreLFMatrix_C
scoreOCMatrix_C	scoreOCMatrix_C
tmod2gsc	tmod2gsc
write_gmt	write_gmt
yassifyPathways	yassifyPathways
