- saveResults(File) - Method in class org.nexusformat.nxvalidate.FileActions
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- saveUserSettings() - Method in class org.nexusformat.nxvalidate.UserSettings
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- SchematronFilter - Class in org.nexusformat.nxvalidate.filter
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- SchematronFilter() - Constructor for class org.nexusformat.nxvalidate.filter.SchematronFilter
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- setBadNode(boolean) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
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If a node in the reduced XML document fails one of the schematron tests
then the node can be marked as a bad node with a boolean flag.
- setCollapsedIcon(Icon) - Method in class org.nexusformat.nxvalidate.XMLTreeRenderer
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sets the icon for the handel of a collapsed node.
- setConvertNxs(boolean) - Method in class org.nexusformat.nxvalidate.NXvalidate
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- setData(String) - Method in class org.nexusformat.nxvalidate.NXvalidateGuiTree.ITag
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- setDataFileList(ArrayList<String>) - Method in class org.nexusformat.nxvalidate.FileActions
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- setDataFiles(File[]) - Method in class org.nexusformat.nxvalidate.FileActions
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- setDocument(Document) - Method in interface org.nexusformat.nxvalidate.NodeFilterInterface
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Sets the document to which to apply the filter.
- setDocument(boolean) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
-
Set the flag that says that this node is a documents node i.e.
- setDocument(Document) - Method in class org.nexusformat.nxvalidate.SVRLNodeFilter
-
Sets the document to which to apply the filter.
- setExpandedIcon(Icon) - Method in class org.nexusformat.nxvalidate.XMLTreeRenderer
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sets the icon for the handle of an expanded node.
- setFilenames(ArrayList<String>) - Method in class org.nexusformat.nxvalidate.NXvalidate
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- setFilterDocument(Document) - Method in interface org.nexusformat.nxvalidate.NodeFilterInterface
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Sets a DOM document (filter document) that contains a list of nodes
that have failed any validation tests, for example, the SVRL file.
- setFilterDocument(Document) - Method in class org.nexusformat.nxvalidate.SVRLNodeFilter
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Sets a DOM document (filter document) that contains a list of nodes
that have failed any validation tests, for example, the SVRL file.
- setKeepTemp(boolean) - Method in class org.nexusformat.nxvalidate.NXvalidate
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- setKeepTemp(boolean) - Method in class org.nexusformat.nxvalidate.ValidatorUtils
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Set a flag that indicates that the temporary files
(such as the reduced document and the validation results)
should be kept (true).
- setNXconvert(String) - Method in class org.nexusformat.nxvalidate.UserSettings
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- setNXConvertCommand(String) - Method in class org.nexusformat.nxvalidate.NXSettingsDialog
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- setNXConvertFile(String) - Method in class org.nexusformat.nxvalidate.FileActions
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- setNXDLFile(File) - Method in class org.nexusformat.nxvalidate.FileActions
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- setNXDLFile(File) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
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Set the NXDL file belonging to the root node.
- setNXDLFile(File) - Method in class org.nexusformat.nxvalidate.NXValidateDialog
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- setNXDLFile(JTree, File) - Method in class org.nexusformat.nxvalidate.TreeUtils
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- setNXS(File) - Method in class org.nexusformat.nxvalidate.ValidatorUtils
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Set the File object pointing to the NEXUS file.
- setNXSFile(File) - Method in class org.nexusformat.nxvalidate.FileActions
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- setNXSFile(File) - Method in class org.nexusformat.nxvalidate.NXvalidate
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- setParent(MutableTreeNode) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
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- setReduced(File) - Method in class org.nexusformat.nxvalidate.NXvalidate
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- setReduced(File) - Method in class org.nexusformat.nxvalidate.ValidatorUtils
-
Set the File object pointing to the reduced NEXUS file.
- setReducedDoc(Document) - Method in class org.nexusformat.nxvalidate.FileActions
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- setReducedDoc(Document) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
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Initially the Nexus file is converted to a reduced (all data removed)
XML document via the Nexus convert command.
- setReducedDoc(JTree, Document) - Method in class org.nexusformat.nxvalidate.TreeUtils
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- setReducedFile(File) - Method in class org.nexusformat.nxvalidate.FileActions
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- setReducedFile(File) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
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Set the resultant file produced after NXConvert has been run on the
NXS file.
- setReducedFile(JTree, File) - Method in class org.nexusformat.nxvalidate.TreeUtils
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- setResultsDoc(Document) - Method in class org.nexusformat.nxvalidate.FileActions
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- setResultsDoc(Document) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
-
Get the resultant DOM document produced after the validation procedure
has been performed.
- setResultsDoc(JTree, Document) - Method in class org.nexusformat.nxvalidate.TreeUtils
-
- setResultsFile(File) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
-
Get the resultant file produced after the validation procedure has been
performed.
- setResultsFile(JTree, File) - Method in class org.nexusformat.nxvalidate.TreeUtils
-
- setRoot(NXNodeMapper) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
-
Set the root node that this node belongs to.
- setSaveDirectory(File) - Method in class org.nexusformat.nxvalidate.FileActions
-
- setSchematron(File) - Method in class org.nexusformat.nxvalidate.NXvalidate
-
- setSchematron(File) - Method in class org.nexusformat.nxvalidate.ValidatorUtils
-
Set the File object pointing to the Schematron file that contains the
rules for checking the reduced document.
- setUserObject(Object) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
-
- setValidated(JTree, File) - Method in class org.nexusformat.nxvalidate.TreeUtils
-
- setValidatedNode(boolean) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
-
If a node has been validated then we can indicate the fact with a boolean flag.
- setVerbose(int) - Method in class org.nexusformat.nxvalidate.NXvalidate
-
- setWarnNode(boolean) - Method in class org.nexusformat.nxvalidate.NXNodeMapper
-
If a node in the reduced XML document fails one of the schematron report tests
then the node can be marked as a warning node with a boolean flag.
- setWhich(int) - Method in class org.nexusformat.nxvalidate.FileActions
-
- showGoodNodes(JTree) - Method in class org.nexusformat.nxvalidate.TreeUtils
-
- startElement(String, String, String, Attributes) - Method in class org.nexusformat.nxvalidate.XMLIconTreeHandler
-
- StreamGobbler - Class in org.nexusformat.nxvalidate
-
Thread for consuming streams.
- StreamGobbler(InputStream, String) - Constructor for class org.nexusformat.nxvalidate.StreamGobbler
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- SVRLitem - Class in org.nexusformat.nxvalidate
-
- SVRLitem(Node) - Constructor for class org.nexusformat.nxvalidate.SVRLitem
-
- SVRLNodeFilter - Class in org.nexusformat.nxvalidate
-
Implementation of NodeFilterInterface which filters out elements in a NEXUS
reduced file if they have failed the validation tests.
- SVRLNodeFilter() - Constructor for class org.nexusformat.nxvalidate.SVRLNodeFilter
-