Metadata-Version: 1.2
Name: crn
Version: 0.1.0a2
Summary: A Python3.6+ CRN Simulator
Home-page: https://github.com/enricozb/python-crn
Author: Enrico Borba
Author-email: enricozb@gmail.com
License: MIT
Download-URL: https://github.com/enricozb/python-crn/archive/0.1.0a0.tar.gz
Description: # Python CRN
        A CRN simulator based on
        [David Soloveichik's Mathematica CRN Simulator](
        http://users.ece.utexas.edu/~soloveichik/crnsimulator.html)
        
        ## Version & Promises
        Currently this is in a pre-alpha state, but already has some reasonable
        features. No guarantees are made for backward-compatibility. That is, some
        of the API calls might change, some of the reaction literals syntax might
        change, etc.
        
        ## Dependencies
        The package is written for Python 3.6+ and definitely won't work on an older
        Python version.
        
        The current list of dependencies are
        ```
        numpy
        scipy
        sympy
        stochpy
        ```
        
        ## Examples
        A simple example of creating a crn, simulating it, and plotting it, is given
        here. An explanation of this code in detail can be found in
        `crn/examples/basic_example.py`.
        
        ```python
        from crn import *
        
        a, a1, a2, b, c, t, z = species("A A1 A2 B C T Z")
        
        sys = CRN(
            a >> a1 + a2,
            a1 + b >> t,
            c >> z,
            (a2 >> z).k(2.5),
            z + t >> 0)
        
        sys.simulate({a: 2.5, b: 2.0}, t=5).plot("sim.png", title="Example Simulation")
        ```
        
        More examples will be added soon in the `crn/examples/` folder.
        
        
        ## Installation
        Install using `pip` or `pip3` depending on your setup.
        ```
        pip3 install crn
        ```
        
        Note: [StochPy](https://github.com/SystemsBioinformatics/stochpy) is not
        Python 3 ready. So, when `crn` is imported, it actually runs `lib2to3` on the
        files that need to be modified within StochPy.
        
        
Keywords: crn,simulator,simulation
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Education
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Chemistry
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Python: >=3.6
