Amesos2 - Direct Sparse Solver Interfaces  Version of the Day
Amesos2_Lapack_def.hpp
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44 
53 #ifndef AMESOS2_LAPACK_DEF_HPP
54 #define AMESOS2_LAPACK_DEF_HPP
55 
56 #include <Teuchos_RCP.hpp>
57 
59 #include "Amesos2_Lapack_decl.hpp"
60 
61 namespace Amesos2 {
62 
63 
64  template <class Matrix, class Vector>
65  Lapack<Matrix,Vector>::Lapack(Teuchos::RCP<const Matrix> A,
66  Teuchos::RCP<Vector> X,
67  Teuchos::RCP<const Vector> B)
68  : SolverCore<Amesos2::Lapack,Matrix,Vector>(A, X, B) // instantiate superclass
69  , is_contiguous_(true)
70  {
71  // Set default parameters
72  Teuchos::RCP<Teuchos::ParameterList> default_params
73  = Teuchos::parameterList( *(this->getValidParameters()) );
74  this->setParameters(default_params);
75  }
76 
77 
78  template <class Matrix, class Vector>
80  {
81  /*
82  * Free any memory allocated by the Lapack library functions (i.e. none)
83  */
84  }
85 
86 
87  template<class Matrix, class Vector>
88  int
90  {
91  return(0);
92  }
93 
94 
95  template <class Matrix, class Vector>
96  int
98  {
99  return(0);
100  }
101 
102 
103  template <class Matrix, class Vector>
104  int
106  {
107  int factor_ierr = 0;
108 
109  if( this->root_ ){
110  // Set here so that solver_ can refresh it's internal state
111  solver_.setMatrix( Teuchos::rcpFromRef(lu_) );
112 
113  {
114 #ifdef HAVE_AMESOS2_TIMERS
115  Teuchos::TimeMonitor numFactTimer( this->timers_.numFactTime_ );
116 #endif
117  factor_ierr = solver_.factor();
118  }
119  }
120 
121  Teuchos::broadcast(*(this->getComm()), 0, &factor_ierr);
122  TEUCHOS_TEST_FOR_EXCEPTION( factor_ierr != 0,
123  std::runtime_error,
124  "Lapack factor routine returned error code "
125  << factor_ierr );
126  return( 0 );
127  }
128 
129 
130  template <class Matrix, class Vector>
131  int
133  const Teuchos::Ptr<const MultiVecAdapter<Vector> > B) const
134  {
135  using Teuchos::as;
136 
137  // Convert X and B to SerialDenseMatrix's
138  const global_size_type ld_rhs = this->root_ ? X->getGlobalLength() : 0;
139  const size_t nrhs = X->getGlobalNumVectors();
140 
141  const size_t val_store_size = as<size_t>(ld_rhs * nrhs);
142  if( this->root_ ){
143  rhsvals_.resize(val_store_size);
144  }
145 
146  { // Get values from RHS B
147 #ifdef HAVE_AMESOS2_TIMERS
148  Teuchos::TimeMonitor mvConvTimer( this->timers_.vecConvTime_ );
149  Teuchos::TimeMonitor redistTimer( this->timers_.vecRedistTime_ );
150 #endif
152  scalar_type> copy_helper;
153  if ( is_contiguous_ == true ) {
154  copy_helper::do_get(B, rhsvals_(), as<size_t>(ld_rhs), ROOTED, 0);
155  }
156  else {
157  copy_helper::do_get(B, rhsvals_(), as<size_t>(ld_rhs), CONTIGUOUS_AND_ROOTED, 0);
158  }
159  }
160 
161  int solve_ierr = 0;
162  // int unequilibrate_ierr = 0; // unused
163 
164  if( this->root_ ){
165 #ifdef HAVE_AMESOS2_TIMERS
166  Teuchos::TimeMonitor solveTimer( this->timers_.solveTime_ );
167 #endif
168 
169  using Teuchos::rcpFromRef;
170  typedef Teuchos::SerialDenseMatrix<int,scalar_type> DenseMat;
171 
172  DenseMat rhs_dense_mat(Teuchos::View, rhsvals_.getRawPtr(),
173  as<int>(ld_rhs), as<int>(ld_rhs), as<int>(nrhs));
174 
175  solver_.setVectors( rcpFromRef(rhs_dense_mat),
176  rcpFromRef(rhs_dense_mat) );
177 
178  solve_ierr = solver_.solve();
179 
180  // Solution is found in rhsvals_
181  }
182 
183  // Consolidate and check error codes
184  Teuchos::broadcast(*(this->getComm()), 0, &solve_ierr);
185  TEUCHOS_TEST_FOR_EXCEPTION( solve_ierr != 0,
186  std::runtime_error,
187  "Lapack solver solve method returned with error code "
188  << solve_ierr );
189 
190  /* Update X's global values */
191  {
192 #ifdef HAVE_AMESOS2_TIMERS
193  Teuchos::TimeMonitor redistTimer( this->timers_.vecRedistTime_ );
194 #endif
195 
196  if ( is_contiguous_ == true ) {
198  MultiVecAdapter<Vector>,scalar_type>::do_put(X, rhsvals_(),
199  as<size_t>(ld_rhs),
200  ROOTED);
201  }
202  else {
204  MultiVecAdapter<Vector>,scalar_type>::do_put(X, rhsvals_(),
205  as<size_t>(ld_rhs),
207  }
208  }
209 
210  return( 0 );
211  }
212 
213 
214  template <class Matrix, class Vector>
215  bool
217  {
218  // Factorization of rectangular matrices is supported, but not
219  // their solution. For solution we can have square matrices.
220 
221  return( this->globalNumCols_ == this->globalNumRows_ );
222  }
223 
224 
225  template <class Matrix, class Vector>
226  void
227  Lapack<Matrix,Vector>::setParameters_impl(const Teuchos::RCP<Teuchos::ParameterList> & parameterList )
228  {
229  solver_.solveWithTranspose( parameterList->get<bool>("Transpose",
230  this->control_.useTranspose_) );
231 
232  solver_.factorWithEquilibration( parameterList->get<bool>("Equilibrate", true) );
233 
234  if( parameterList->isParameter("IsContiguous") ){
235  is_contiguous_ = parameterList->get<bool>("IsContiguous");
236  }
237 
238  // solver_.solveToRefinedSolution( parameterList->get<bool>("Refine", false) );
239  }
240 
241  template <class Matrix, class Vector>
242  Teuchos::RCP<const Teuchos::ParameterList>
244  {
245  using Teuchos::ParameterList;
246 
247  static Teuchos::RCP<const Teuchos::ParameterList> valid_params;
248 
249  if( is_null(valid_params) ){
250  Teuchos::RCP<Teuchos::ParameterList> pl = Teuchos::parameterList();
251 
252  pl->set("Equilibrate", true, "Whether to equilibrate the input matrix");
253 
254  pl->set("IsContiguous", true, "Whether GIDs contiguous");
255 
256  // TODO: Refinement does not seem to be working with the SerialDenseSolver. Not sure why.
257  // pl->set("Refine", false, "Whether to apply iterative refinement");
258 
259  valid_params = pl;
260  }
261 
262  return valid_params;
263  }
264 
265  template <class Matrix, class Vector>
266  bool
268  {
269 #ifdef HAVE_AMESOS2_TIMERS
270  Teuchos::TimeMonitor convTimer(this->timers_.mtxConvTime_);
271 #endif
272 
273  // We only load the matrix when numericFactorization is called
274  if( current_phase < NUMFACT ) return( false );
275 
276  if( this->root_ ){
277  Kokkos::resize(nzvals_view_,this->globalNumNonZeros_);
278  Kokkos::resize(rowind_view_,this->globalNumNonZeros_);
279  Kokkos::resize(colptr_view_,this->globalNumCols_ + 1);
280  }
281 
282  // global_size_type nnz_ret = 0;
283  int nnz_ret = 0;
284  {
285 #ifdef HAVE_AMESOS2_TIMERS
286  Teuchos::TimeMonitor mtxRedistTimer( this->timers_.mtxRedistTime_ );
287 #endif
288 
289  // typedef Util::get_ccs_helper<MatrixAdapter<Matrix>,
290  // scalar_type, global_ordinal_type, global_size_type> ccs_helper;
292  host_value_type_array, host_ordinal_type_array, host_ordinal_type_array> ccs_helper;
293  if ( is_contiguous_ == true ) {
294  ccs_helper::do_get(this->matrixA_.ptr(),
295  nzvals_view_, rowind_view_, colptr_view_,
296  nnz_ret, ROOTED, ARBITRARY, this->rowIndexBase_);
297  }
298  else {
299  ccs_helper::do_get(this->matrixA_.ptr(),
300  nzvals_view_, rowind_view_, colptr_view_,
301  nnz_ret, CONTIGUOUS_AND_ROOTED, ARBITRARY, this->rowIndexBase_);
302  }
303  }
304 
305  if( this->root_ ){
306  // entries are initialized to zero in here:
307  lu_.shape(this->globalNumRows_, this->globalNumCols_);
308 
309  // Put entries of ccs representation into the dense matrix
310  global_size_type end_col = this->globalNumCols_;
311  for( global_size_type col = 0; col < end_col; ++col ){
312  global_ordinal_type ptr = colptr_view_[col];
313  global_ordinal_type end_ptr = colptr_view_[col+1];
314  for( ; ptr < end_ptr; ++ptr ){
315  lu_(rowind_view_[ptr], col) = nzvals_view_[ptr];
316  }
317  }
318 
319  // lu_.print(std::cout);
320  }
321 
322  return( true );
323 }
324 
325 
326  template<class Matrix, class Vector>
327  const char* Lapack<Matrix,Vector>::name = "LAPACK";
328 
329 
330 } // end namespace Amesos2
331 
332 #endif // AMESOS2_LAPACK_DEF_HPP
Amesos2::SolverCore: A templated interface for interaction with third-party direct sparse solvers...
Definition: Amesos2_SolverCore_decl.hpp:105
Amesos2 interface to the LAPACK.
Definition: Amesos2_Lapack_decl.hpp:80
A generic helper class for getting a CCS representation of a Matrix.
Definition: Amesos2_Util.hpp:651
EPhase
Used to indicate a phase in the direct solution.
Definition: Amesos2_TypeDecl.hpp:65
int symbolicFactorization_impl()
No-op.
Definition: Amesos2_Lapack_def.hpp:97
Helper class for getting 1-D copies of multivectors.
Definition: Amesos2_MultiVecAdapter_decl.hpp:267
bool matrixShapeOK_impl() const
Determines whether the shape of the matrix is OK for this solver.
Definition: Amesos2_Lapack_def.hpp:216
Definition: Amesos2_TypeDecl.hpp:143
void setParameters_impl(const Teuchos::RCP< Teuchos::ParameterList > &parameterList)
Definition: Amesos2_Lapack_def.hpp:227
Teuchos::RCP< const Teuchos::ParameterList > getValidParameters() const
Return a const parameter list of all of the valid parameters that this->setParameterList(...) will accept.
Definition: Amesos2_SolverCore_def.hpp:550
Definition: Amesos2_AbstractConcreteMatrixAdapter.hpp:48
int solve_impl(const Teuchos::Ptr< MultiVecAdapter< Vector > > X, const Teuchos::Ptr< const MultiVecAdapter< Vector > > B) const
Lapack solve.
Definition: Amesos2_Lapack_def.hpp:132
Teuchos::RCP< const Teuchos::ParameterList > getValidParameters_impl() const
Definition: Amesos2_Lapack_def.hpp:243
Lapack(Teuchos::RCP< const Matrix > A, Teuchos::RCP< Vector > X, Teuchos::RCP< const Vector > B)
Initialize from Teuchos::RCP.
Definition: Amesos2_Lapack_def.hpp:65
int preOrdering_impl()
No-op.
Definition: Amesos2_Lapack_def.hpp:89
super_type & setParameters(const Teuchos::RCP< Teuchos::ParameterList > &parameterList)
Set/update internal variables and solver options.
Definition: Amesos2_SolverCore_def.hpp:518
Declarations for the Amesos2 interface to LAPACK.
bool loadA_impl(EPhase current_phase)
Reads matrix data into internal structures.
Definition: Amesos2_Lapack_def.hpp:267
Definition: Amesos2_TypeDecl.hpp:127
~Lapack()
Destructor.
Definition: Amesos2_Lapack_def.hpp:79
Helper class for putting 1-D data arrays into multivectors.
Definition: Amesos2_MultiVecAdapter_decl.hpp:373
A templated MultiVector class adapter for Amesos2.
Definition: Amesos2_MultiVecAdapter_decl.hpp:176
Definition: Amesos2_TypeDecl.hpp:128
int numericFactorization_impl()
Perform numeric factorization using LAPACK.
Definition: Amesos2_Lapack_def.hpp:105