
Usage:

$ Rscript by-admixture.June28.R <reference> <input> <job_id> <out_dir> [<cond-pop> [<num_repl> [subset_size]]]

  Arguments:
 1 Reference file - a CSV file with mean population admixture
 2 Input fie
 3 Job ID
 4 Output directory
 5 Initial populations file  - use \"\" for none
 6 Number of replications (default 1)
 7 Subset size ( desired number of populations in the solution) default 4
 
 To use standard deviations for reference
 place a file with name (your_reference_file_name).sdev 
 in the same directory where the reference is.
Example:
 
Rscript by-admixture.June28.R stdev/reference.csv stdev/test.csv TEST  stdev/result "" 3
then if a file stdev/reference.csv.sdev is present, it will be used.

git rev-list -n 5 --before="2014-11-06 00:00" master
git bundle create changes.bundle a489a28..HEAD
mail -s changes -a changes.bundle mackoel@gmail.com


git bundle verify changes.bundle
git remote add apache changes.bundle
git pull apache HEAD
git push
