Here is a list of all files with brief descriptions:

[detail level 1234567]

▼ src
doxygen
▼ stan
▼ agrad
agrad.cpp
agrad.hpp
agrad_thread_safe.hpp
error_handling.hpp
matrix.cpp
matrix.hpp
matrix_error_handling.hpp
partials_vari.hpp
special_functions.hpp
▼ command
stanc.cpp
stanc_helper.hpp
▼ gm
► grammars
common_adaptors_def.hpp
expression_grammar.hpp
expression_grammar_def.hpp
expression_grammar_inst.cpp
iterator_typedefs.hpp
program_grammar.hpp
program_grammar_def.hpp
program_grammar_inst.cpp
statement_2_grammar.hpp
statement_2_grammar_def.hpp
statement_2_grammar_inst.cpp
statement_grammar.hpp
statement_grammar_def.hpp
statement_grammar_inst.cpp
term_grammar.hpp
term_grammar_def.hpp
term_grammar_inst.cpp
var_decls_grammar.hpp
var_decls_grammar_def.hpp
var_decls_grammar_inst.cpp
whitespace_grammar.hpp
whitespace_grammar_def.hpp
whitespace_grammar_inst.cpp
ast.hpp
ast_def.cpp
command.hpp
compiler.hpp
function_signatures.hpp
generator.hpp
parser.hpp
▼ io
cmd_line.hpp
csv_writer.hpp
dump.hpp
reader.hpp
util.hpp
var_context.hpp
writer.hpp
▼ math
boost_error_handling.hpp
constants.hpp
EigenDenseBaseAddons.hpp
error_handling.hpp
matrix.cpp
matrix.hpp
matrix_error_handling.hpp
special_functions.hpp
util.hpp
▼ mcmc
adaptive_cdhmc.hpp
adaptive_hmc.hpp
adaptive_sampler.hpp
chains.hpp
dualaverage.hpp
hmc.hpp
hmc_base.hpp
nuts.hpp
nuts_diag.hpp
sampler.hpp
util.hpp
▼ memory
chunk_alloc.hpp
stack_alloc.hpp
▼ meta
traits.hpp
▼ model
model_header.hpp
prob_grad.hpp
prob_grad_ad.hpp
stanc_model.hpp
▼ optimization
newton.hpp
▼ prob
► distributions
► multivariate
► continuous
dirichlet.hpp
inv_wishart.hpp
lkj_corr.hpp
lkj_cov.hpp
multi_normal.hpp
multi_student_t.hpp
wishart.hpp
► discrete
categorical.hpp
multinomial.hpp
continuous.hpp
discrete.hpp
► univariate
► continuous
beta.hpp
cauchy.hpp
chi_square.hpp
double_exponential.hpp
exponential.hpp
gamma.hpp
inv_chi_square.hpp
inv_gamma.hpp
logistic.hpp
lognormal.hpp
normal.hpp
pareto.hpp
scaled_inv_chi_square.hpp
student_t.hpp
trunc_normal.hpp
uniform.hpp
weibull.hpp
► discrete
bernoulli.hpp
beta_binomial.hpp
binomial.hpp
hypergeometric.hpp
neg_binomial.hpp
ordered_logistic.hpp
poisson.hpp
continuous.hpp
discrete.hpp
multivariate.hpp
univariate.hpp
autocorrelation.hpp
autocovariance.hpp
constants.hpp
distributions.hpp
traits.hpp
transform.hpp
agrad.hpp
gm.hpp
io.hpp
math.hpp
mcmc.hpp
memory.hpp
meta.hpp
model.hpp
prob.hpp
version.hpp