Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 149 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 57204 MD5sum: ed15d6b3a1657a4a01827cacf9b86047 SHA1: b4398a9b4801b959b794c40389c0ebb0bf7656bd SHA256: d79346727eed36e7bd015f20cfff38b6e20dfd6d1dd660d3ebb746822ee89d6f Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 108605 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.3), libstdc++6 (>= 5.2), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 22751640 MD5sum: c1f49ed5f4f6d92c9a4b347bb1f8effd SHA1: 17036f1a929b3bbb48507763fdb476d18364dac6 SHA256: a5a95d4fa5346f19b8c755fdbd51f1d9a4bd800dc6936b60f26b359e9a39b6fa Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: perl-rna Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 11485 Depends: perl, perlapi-5.34.0, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.7.2-1_amd64.deb Size: 2266624 MD5sum: 739ed2f78b32c3ed0bfca8b877a3d3d8 SHA1: dc833fadeab586e7d351878363c24fe3c78f2810 SHA256: d1c78204501478e7497527cc9ed4a5d6e97d6e00ac98f79260ae88b03ecb5589 Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 27 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 6620 MD5sum: 77eab6dc2b802c740e2b48ee1459cfab SHA1: 313f34c7c90e19ef645dd2504d69e44bd4adc134 SHA256: a2900b2d8f5f3874e7e15a1457b1f8b1832837d1c9b841db97fa7d9acb43324c Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: python3-rna Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 11564 Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.35), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 11) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.7.2-1_amd64.deb Size: 2155702 MD5sum: d55796186142b9a287e0264d0ce11ad3 SHA1: 505b54106eb9f8c33f8c3376a07368ebf9657f0b SHA256: 7251d2b6324cc277b6d1776d8cb8361224dffd393fc9757b6a7c8fd6ab0f6578 Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 37301 Depends: libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.35), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 11) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.7.2-1_amd64.deb Size: 3211444 MD5sum: a46c46dd492c72df7d1239e6e769ada2 SHA1: d12b9a30146a763c7751687ab531ff5f43ed9957 SHA256: c72233daa191421f374b9363dd25b3f5fdb01ece4405f9a18e9a4e18d3b3d6ae Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dev Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 107387 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.7.2-1_amd64.deb Size: 34434502 MD5sum: 0c52740e1194e5f613f9706c0c42bace SHA1: 1f0ecb9f44458c7bdabb6b774eb6ffc9bb842a97 SHA256: f4f40bc1fc1471abeca91597d064abff66af94cb154e7902ffbf03b50cf9ea33 Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.7.2-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 27066 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.7.2-1_all.deb Size: 12164268 MD5sum: 7a66feb9669d1108b1dd99e5d2d59740 SHA1: b23ff245acd9be8fd41656853c6dcce39d8798e2 SHA256: 688567eb59853c55842ed57adb7cabfb0d425058cca71a12e60efded0c92827c Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format