Package: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 153 Depends: libc6 (>= 2.34), perl Filename: amd64/barriers_1.8.1-1_amd64.deb Size: 58392 MD5sum: e552313cdf8aa1cf1a2f17879cf69ea6 SHA1: 00bc1bea07beb8c1d1afe69711ab2636ac65f466 SHA256: 40b866c21ee9b65ad0418fa0f3ca321710d9e1c2d15e1cd0859d587dec35390e Section: science Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Compute local minima and energy barriers of a landscape The program barriers reads an energy sorted list of conformations of a landscape, and computes local minima and energy barriers of the landscape. For RNA secondary structures, suitable input is produced by RNAsubopt For each local minimum found it prints to stdout, the conformation of the minimum, its energy, the number of the "parent"-minimum it merges with, and the height of the energy barrier. Additional information on each minimum, such as saddle point conformation and basin sizes can be included via options. A PostScript drawing of the resulting tree is written to "tree.ps" in the current directory. Package: mlapack-dev Source: mlapack Version: 0.8.1-2 Architecture: amd64 Maintainer: Maho Nakata Installed-Size: 104325 Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.3), libstdc++6 (>= 13.1), libgomp1, libquadmath0, libgmp-dev, libmpfr-dev, libmpc-dev, libqd-dev Conflicts: mlapack-dev Provides: mlapack-dev Filename: amd64/mlapack-dev_0.8.1-2_amd64.deb Size: 23143120 MD5sum: 14b2c71c3a0235a8bfc4fd6890250f51 SHA1: 0515d742a9c2e5826fcaab59374aa42eae982027 SHA256: 3bbb8104f340137b88bd3b54db16cb1a6a5c0228389cbd1f58656b1373791303 Section: devel Priority: optional Description: mlapack - MPACK multi precision linear algebra package development files The MPACK is a multiprecision linear algebra package based on BLAS and LAPACK. This package is rewritten in C++, and supports several high precision libraries like GMP, MPFR and QD etc so that users can choose for user's convenience. The MPACK is a free software (2-clause BSD style license with original license by LAPACK). Package: perl-rna Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 11588 Depends: perl (>= 5.38.2-3.2build2), perlapi-5.38.2, libc6 (>= 2.38), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 13.1) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/perl-rna_2.7.2-1_amd64.deb Size: 2296002 MD5sum: fa156ffc045c5e9da2dddd77043026e4 SHA1: 8654e535b0f88eac34df8ad79aeb4049a0d74646 SHA256: 6f2aae6dd902c8fc8e847e33fe75e4c7dbbeb9ce9958f08902e5b375ee56ba4e Section: perl Priority: optional Description: Perl bindings to ViennaRNA RNAlib The RNA module to access RNAlib C-library functions from within Perl scripts Package: perl-rna-barrier Source: barriers Version: 1.8.1-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 27 Depends: perl:any, perl, perl-rna Filename: amd64/perl-rna-barrier_1.8.1-1_amd64.deb Size: 6546 MD5sum: b3b28d1d96b4c9f731f59c4a1b17356c SHA1: dd87dad65e3efe1b2a801605e062fff350f55384 SHA256: 15f764067beee16ffdd7467864c0cbdeae8b9f079c647a031763a6eb057d7191 Section: perl Priority: optional Homepage: http://www.tbi.univie.ac.at/RNA/Barriers Description: Perl module and scripts for Barriers The RNA/barrier module and perl scripts to access some functionality of the Barriers program Package: python3-rna Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 11655 Depends: python3 (<< 3.13), python3 (>= 3.12~), python3:any, libc6 (>= 2.38), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), libstdc++6 (>= 13.1) Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/python3-rna_2.7.2-1_amd64.deb Size: 2188058 MD5sum: 70d50c65f4e0237a0995b15aded671fc SHA1: 27b752c2a07c554fa36bb55d05e371f4564d56e2 SHA256: c25654385be096e0f1a13ac99175bb0853226d8e57ac4641bfe61379a0fbf06e Section: python Priority: optional Description: Python 3 bindings to ViennaRNA RNAlib The RNA class to access RNAlib C-library functions from within Python 3 scripts Package: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 37048 Depends: libgomp1 (>= 4.9), libgsl27 (>= 2.7.1), libmpfr6 (>= 3.1.3), liblapack | liblapack3, liblapacke, libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 13.1) Recommends: python3-rna, perl-rna Breaks: vienna-rna (<< 2.2.1-2) Replaces: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna_2.7.2-1_amd64.deb Size: 3230590 MD5sum: c01e03410b4afc6836412fe05e6acdcc SHA1: f7d8b2d933f1f53aeef4dfe89df7b47a32efe469 SHA256: 7c032aaa298c05c0c3a0ebbbe41cd13e0a209ab13a7caca3f2b142e7aab5f17c Section: science Priority: optional Description: Vienna RNA Package - Core The Vienna RNA Package Core consists of several executable programs and various scripts for the prediction and comparison of RNA secondary structures. Package: viennarna-dev Source: viennarna Version: 2.7.2-1 Architecture: amd64 Maintainer: Ronny Lorenz Installed-Size: 107310 Depends: libgsl0-dev | libgsl-dev, libmpfr-dev Conflicts: vienna-rna (<< 2.2.1-2) Filename: amd64/viennarna-dev_2.7.2-1_amd64.deb Size: 34274700 MD5sum: deae348ab2a7c3da0437b006fefb34e9 SHA1: 5abdd9f87c7bbc215b4f39b7e6ca7d04f58e4b0a SHA256: 857f7a58347fb9024cdde23291691cf0a80540fca10dba2783a350840df4cb75 Section: devel Priority: optional Description: ViennaRNA Package - RNAlib Development files Header files and static RNAlib C-library of the ViennaRNA Package Package: viennarna-doc Source: viennarna Version: 2.7.2-1 Architecture: all Maintainer: Ronny Lorenz Installed-Size: 27065 Conflicts: vienna-rna (<< 2.2.1-2) Filename: all/viennarna-doc_2.7.2-1_all.deb Size: 12145204 MD5sum: 0c0f7b1c3a2468f4c4293c6a98058068 SHA1: b52f69615411e04d091adec010cf85bb622f30b0 SHA256: e6ff81bb4f2f96d55a564bc2d269ecc2a54d830fa8e3467cf1c6aba90f078314 Section: doc Priority: optional Description: ViennaRNA Package - RNAlib Reference Manual Reference Manual for RNAlib C-library in PDF and HTML format